Scaffold Ga0335035

Basic Information
Taxon OID	3300034105 Open in IMG/M
Scaffold ID	Ga0335035_0006584 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034105 Open in IMG/M

Scaffold ID

Ga0335035_0006584 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7792
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	15 (78.95%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (85.71%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

7792

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

15 (78.95%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (85.71%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F015467	Metagenome	254	Y
F015702	Metagenome	252	Y
F023588	Metagenome	209	N
F032578	Metagenome	179	N
F047047	Metagenome	150	N
F049615	Metagenome / Metatranscriptome	146	N
F057369	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0335035_0006584_1688_1903	F049615	AGGAG	MTPDTVNLIAELEQRVSELSAALELVTEDRDNLRDAGNSLMNELEACRTTLVQAHSDISRLRVYLAQGAEL
Ga0335035_0006584_2521_2952	F032578	AGGA	MIDPIEGRTYDVRKEDIQAINYIKTQIQSLDHERRNEYATLLIDAQSAKRNINLSANKSHRRYEIARGILLLMQDGQFDRDLVKGICSHITKQQYLKAGEALGHLNVAQAELFAQICYGITADQVTIQYIPEQNTFSVQEVRQ
Ga0335035_0006584_5192_5725	F015467	GGA	MRRITATIVTTLTLLIGIGTAHAAQAPEPTHITSTTRMEVIPKERPTNIVFRHGDISWLPELAAQAGWPQKTWGKLGMIILRESGACPARRGGDIVNKNCEVIGHDGSNHASDSGLLQINGVNYNPKRNKYAPICTQMKICTQEPLLDALINLKAGLLLFRATGSDWSPWTVPEGGW
Ga0335035_0006584_5848_6009	F015702	AGGAGG	MRTVELEYTASKLAELAREVWGDNAVEYLAARLTTVVSDNQLKVLIDSLTKTR
Ga0335035_0006584_611_853	F047047	AGGAGG	MATQPKQHKYPAINLLNTFTPGTNDQQMANMLGISRSCVIRWRTFGRTLYEYQADNYAIKLGFHPAEIWDNWLDDAMSIA
Ga0335035_0006584_6334_6585	F023588	GAG	MVLVTWADAHSGVATWTPIDALDKDEMIVTSCGFLLATCDGGKPDHVTIYQSRTAEDDVDHVLHIPCAMVRQIAICTPETLMK
Ga0335035_0006584_875_1114	F057369	N/A	VTGVLKMMIEDPVAEFIEAAADGLCTAYVVVATVERIDGSQSFWITTLNRQTSSTTLGLLVSATSAEQYRIAKSLTEGT

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335035_0006584

Overview

Ecosystem & Geography

Associated Families

Sequences