NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335035_0046022

Scaffold Ga0335035_0046022


Overview

Basic Information
Taxon OID3300034105 Open in IMG/M
Scaffold IDGa0335035_0046022 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2883
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042300Metagenome / Metatranscriptome158N
F082114Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0335035_0046022_2177_2548F082114GAGMISGSVSSVSDTITITGGGTVSSSALSFGGFDMEDFLDTYSFNKITVEHKVAEFELLKLKETVPTYADEIKENLSKNLARDIIKKTTFTKKHNVDSDTHHFLGRVWVFTEDELKNLIKEARNV
Ga0335035_0046022_826_1554F042300GGAMPCNFEFLENANYDWMDLLNFHERPFRATFIPSKVWKDLDNYCNDSKGLSNYFRKWKTKVEFLPQKSKAKMYDNYVAVGGEYGPDERQCCIQIYTTEFDRFPFTYDTWNKFKYRIMQTQMHELIHFMQFDRRGDEWSNYVVPYKKVKHEKKNIERRYLSEFDEIQAYAHCVLLDFKIYKPSITTEELINRAKNSKDSSTLNYILKAFNYDYRNNAAIPKLMQQIAKWDRKYQRTIRASRRPK
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