NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335035_0089040

Scaffold Ga0335035_0089040


Overview

Basic Information
Taxon OID3300034105 Open in IMG/M
Scaffold IDGa0335035_0089040 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1999
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → unclassified Armatimonadetes → Armatimonadetes bacterium Cent15-Ar3(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001259Metagenome / Metatranscriptome735Y
F004232Metagenome / Metatranscriptome447Y
F088293Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0335035_0089040_1458_1619F088293N/ALDLPAFADYNDRRQLRAIAMDVRKLEDRIKQLEEENDAMRADLLLWNEKEVKL
Ga0335035_0089040_14_385F004232N/AMPESLPDMAQLLSGFKVADSHLWIEKVPKFVSKLTPSASVATLHENYGIIQGLSYSQGYALHRVEPKIWQDPLGLGGKRSCATGPEWKRKLKSKAQELYPHLDVTLKNCDALLVLHYALGGGR
Ga0335035_0089040_1831_1998F001259AGGAGGMRDCAFIYVHKSNGMIRVESLDTAKHVDQSPEWKHVSTVNPYVALEQILRAKGKER
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