NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0000212

Scaffold Ga0335036_0000212


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0000212 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)52402
Total Scaffold Genes88 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)66 (75.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002540Metagenome / Metatranscriptome550Y
F015583Metagenome / Metatranscriptome253Y
F017816Metagenome238Y
F021066Metagenome220Y
F078203Metagenome116Y

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0000212_11786_12094F002540AGGAGMQNPNYTATAEEYAKYGNTLNVWEQIRLLSQWAPLLAYGQAFANASDPYKKSLVVADAAEWIASKTNAQVDDQLVRLLADILKTPQGEALVRWCLLKAEEAK
Ga0335036_0000212_13851_14000F017816N/AMAPWLIALTGGIYLIVAADLALHGKAGLGLAYLGYAFANVGLYLAASGK
Ga0335036_0000212_14003_14296F015583AGGAGMRFAFVVFLALTASFVHGQTVAVRGPAVISAQDHAVIIARRGSLVHSQCSQTEGIGMGSTPEAARRNCCFFGRKQIVEEGIAYSPSRRMYFAVIRYR
Ga0335036_0000212_2967_3185F021066GGAMAHATLRFDLADPDDEREHRYALAGRDALIALELIESRCRSILKHGEPSPETAKIVEEIRALVPYELTSLLV
Ga0335036_0000212_30305_30490F078203GGAGVNPRVPYSEDEAQEAWLWVGRHGPSNSWTATNGTAARMIGRLLEERERLLAMLANIARPQ
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