 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034106 Open in IMG/M |
| Scaffold ID | Ga0335036_0000387 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 39492 |
| Total Scaffold Genes | 71 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 55 (77.46%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000857 | Metagenome / Metatranscriptome | 858 | Y |
| F001915 | Metagenome / Metatranscriptome | 617 | Y |
| F004695 | Metagenome | 427 | Y |
| F005087 | Metagenome / Metatranscriptome | 412 | Y |
| F051781 | Metagenome | 143 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335036_0000387_15411_15917 | F000857 | AGG | MGLNMNDDNVKVNEEYYTQGILEAGIDGVFRHNDKLFNEVKSGTWSQTFKTPNIDYKVGALNGQRYVQYDQKNVESIREKCKELREFYKQNGTDNPFFAGTAHMMELPKCFAHEISSKWFNNRPWELIKQDKKDKMLFYAIVNRDYSDFVCHPSGKIPIPYNPAIPTK |
| Ga0335036_0000387_15926_16915 | F005087 | AGG | MSGIFIQSANALVSRIAQWVGAIPSALSITVSGVAGTSTPVLTTSANPITFVLPGDFIGTSTMLPYTVVLSVNATTITVSDPDGIWANLTYPATILKLPSQSSMEIMTSIQLAELKMRTVELPALRSNPYDLVAPTILTTDSQGMAAIPTDMNWPILFFQDSQPQNQPANATNMGPWIIYDRVGDREIIRRRMIDQLYIRPFGVPRVIRASFSEVGGKYIFTPNPGDAVTIKAYYQKTFPFLFGSTGDIFEPITQNNDVLASFPEGYLYATLSAYYDKNKNASESQKWDVRFDAAYGLIQDQNFKDKWRGGDQHLTSEFQPRSYRYSFK |
| Ga0335036_0000387_34593_34856 | F051781 | GAGG | MSILEEIKVNRAPSHMVRPAGLDLQKQTKRILGEYVERPKLSGEVQAAKNDIWNRDTYRTGDGDHTAQVPRVGSLQAFSLPSKGNRT |
| Ga0335036_0000387_5251_5757 | F001915 | AGGAG | MNWRLAHPLKDVQDIIEMGLDNLSHEENGILNASVDVFRKCLTVTATVQLFDKSKELLAVCRTDDERLLGYCWFDRGGYTTYSRDEISNAKFHHVDLSLPVRLRVRLINEMIDQHILWANLWGIPVVCSTSIRSEHDGFMRIHKKRGFKVTGSYAWIRTEEGIKCLMK |
| Ga0335036_0000387_9704_11875 | F004695 | AGGA | MLDKQNIIVEYIEAPAGNKGIVFQVAHEVYLKMVDYLRLTQAKNTFNRLSDYHYLNIAVSNSTEPIRGIDYIHPVVTPGVDYATAIITKCLMPNGKVNFEFERFSEMDSEQAVQATEMVKYMINSKNDSYQIIRDWAQDSLLHKNGIVMVSPVREPITQYKEVEGTKDQLRVFETLAAEKGLTVKRQNMKKIDVDLAGVAQEMMAPEEFDSTPSSPQEDINGAINANTIYRAKYKMTGFSTSVRIKHVAQHYFVCNPTISGIQDQDFVGFYDPMTIHECKAQFPYVDLEKLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRYSRVIMLTTAWLRKDVDNDGEEEIVEVCFSGSYVLYVKEVDFIPLASMCPKPITGNFFGYSLAERLVPMQEYATSIARAEMAFAMQASTPRIGVNPEFIDAEEIQRGVSAMFILDRKFDSTKHVFEFAPMQGNLAYVQSSMQRFEADKMAMIGMTSPGDVLNPEVMKDGNSGYKLQLAMGPNQLIQDEMVKNCAIGLKSVIYIVWKTLIQYADDYNIQQLANVCAKGKPFMDAESMNNYEFIDRKLINIDLALGFMSDENRLTRQQLIVQSQQAFAQTMMQLDPSVPELFAKVRRPFEDTLRVLGVKDVDSYLPTIEEAAKMMQVKSQQPKSPEHDEIVSRTALNKAKAEETAANTLFTQKKAEDIDTDNMFEALAAKRGKLTAVQVD |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |