NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0003009

Scaffold Ga0335036_0003009


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0003009 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14594
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (55.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000403Metagenome / Metatranscriptome1177Y
F003134Metagenome / Metatranscriptome505Y
F005697Metagenome / Metatranscriptome392Y
F021065Metagenome / Metatranscriptome220Y
F025683Metagenome / Metatranscriptome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0003009_11629_11802F025683GGAGMVLDLLDPQTLGRLVLVIILMVISAAAGYAKGFKEGKREGIARRKAMVRHIANKAVK
Ga0335036_0003009_11802_12461F005697AGGCGGMGFLDNYEASRERLERWLENFPLGRIETRIVEFSAEKGYVLVEAKAFRNHDDTLPAGIDYAHGYVGAYQQNMKRWFVEDTVTSAIMRVQQLVMGGAERSTKEIMEQVERTPAKVANAEKDYDYWTTKFGDVPSYKTAAEAEQSGIPSLGSSMDEIAKQLGGELVQEAPQCSHGHMIWKQSHDGAPKTWGGYFCTERTKATQCTPRWYVLRSTGKWEPQV
Ga0335036_0003009_12443_12652F000403N/AMGATGMSDFIEIIYPQTMTAKLMENGEVIAEYKVEQCDKCSMLTKFDAFGYQKGYDRNEKIIWFCAGCR
Ga0335036_0003009_12649_13143F021065N/AMKMQLTRQEEFTCHEAALHLASKNTDYWQTREGGYSMDKSLHDLIAQDAQSIGSEWVVAKYLGIEFDPFEQKGKVKADVGSHFEVRWTKYVAGHLVVHEYDRPNDVAILVTGESPNYFIAGWIPIAMAKRPKYRHTKQPNWWVTQINLQPIENLRRSNYGHSAV
Ga0335036_0003009_8134_9381F003134N/AMTQWNPVWLVEIDGVAYTDAVLANLVIRSGRTNIYEQAQAGYVNLQLLDVNQTAIPVSINSTIGVSIKDTSGAFVAIFGGNVVDIGLEVRDVGSSAFTQTYNITALGALARLPKALTNGVLSKEFDGDQIYDILSQVLFGSWAQVPGALTWATYDPTITWANAENNGLGEIDRPGNYELAARSSERIDVYSLVAALATSGLGYIYEDAQGRIGYADSTHRTNYLAANGYVDLDANHARAAGLRIQTRVGDVRNSLTIKYDATSSSERSASDADSIALYGTLAQIIETTLHNSADATAQANFYLSLRAQPQPIFSQIRFDLTNPELDDADRDNLLNIFMGEAIALNNLPLNMSSGTFQGFVEGWSFQASYNQLSVTLLLSPLAYSLQAMRWNDVPVTETWSSVSPTLNWENATIVA
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