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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034106 Open in IMG/M |
| Scaffold ID | Ga0335036_0004706 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11599 |
| Total Scaffold Genes | 23 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (65.22%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003962 | Metagenome / Metatranscriptome | 459 | Y |
| F011208 | Metagenome | 293 | N |
| F019469 | Metagenome | 229 | Y |
| F020665 | Metagenome / Metatranscriptome | 222 | Y |
| F036596 | Metagenome / Metatranscriptome | 169 | Y |
| F037193 | Metagenome / Metatranscriptome | 168 | Y |
| F078389 | Metagenome | 116 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335036_0004706_10536_10871 | F036596 | AGGA | MNKTKTWKIGECCTGGIIQAKISENAYFPGSTTVKILIKDYKTKEVLDSRVFGRIHESRLESFLHDMTTSYHASNVMEWVKENAWPHRVLVAFDGGNNWKTQVETKTWSRS |
| Ga0335036_0004706_11008_11598 | F078389 | AGG | MDEIGAAPGALELPNDKAKNGRPTQYDEKLGVKIIDAVRAGFTLERAAEYIGINPGTAQGWVTKRQDFGRLIKKARREHEMGLLRSVELAGEKSWQARAWILERTHGYAQPSARLNVTQDVTHGISGNLAQLLAGIAGKKKAQVIDCKDVTPKTLLPIRDNSYCATDDTQTIVTTTLEKSGKTRHRAMRRRKPRAES |
| Ga0335036_0004706_17_343 | F019469 | N/A | VIEPKFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLANQIKEDEAKLVELGR |
| Ga0335036_0004706_2511_2699 | F037193 | GGTGG | MKSKDELAMQVKKEWDNQNLRWKLWLEAGGFRTEIFCYSSAEEEYSKCVRELVDHAYQMQSV |
| Ga0335036_0004706_7226_7516 | F003962 | N/A | VGLNHDREQLKVAHKFIALLQRENAQLHGVLRLLGQLVDDMNANCSYEVFEVQWNSLTEQVKRLSGFFESHQKALQSLHDACPEAWDTDEVDDDMR |
| Ga0335036_0004706_787_990 | F020665 | AGGA | MRKRKAKKYIDVVKTEECKSVKITVNVDDDLYEAMAEAGRQHIVKDKKACFEYALNKALLEMIEKLK |
| Ga0335036_0004706_8645_8827 | F011208 | AGGAG | MTEDEIIKAYLSRLGKKGGSVKGSCKARKLSREHYQTVAQAQRERWQKWRTENGRPTIKR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |