NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0007815

Scaffold Ga0335036_0007815


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0007815 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8927
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (27.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008878Metagenome / Metatranscriptome326Y
F010762Metagenome299Y
F025689Metagenome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0007815_1951_2115F010762AGGAGMNQITLDIAFKEWWEASYGRPPGTHAVMTHVAFAAHILELLELTQDMAEALGDE
Ga0335036_0007815_3012_3248F025689N/AMEAQFHGAANAAQLRALHAAADWGGLLEYALLIAEQEASQRSQIHWLVQEASAALRTGLEQWHLDAAEELLRSRRRDV
Ga0335036_0007815_6473_6658F008878N/AMDRFADYIALIVAIHGVALIVVNLTPTPKDNAALGATTKAAVKMYRAIEILAGVITPFVK
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