NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0011817

Scaffold Ga0335036_0011817


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0011817 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7158
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (72.73%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006842Metagenome363Y
F017469Metagenome / Metatranscriptome240Y
F034906Metagenome173Y
F075713Metagenome / Metatranscriptome118N

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0011817_3559_3774F034906GAGMKNTHRVKSAADQAVRQRNYQRARQRAFTRLANAFPDIYRAYLEEEKMVDEKMGKKWLDIDGNTSLTDTRA
Ga0335036_0011817_4030_4248F075713AGGAGMKVKQALELLNDLPLEADLAIQWYTKEDIETNLERKITREVWEGVCEYACDEPDMRDFSIPYLLEKMEREDG
Ga0335036_0011817_4245_4379F017469GGAGGMKDICQFCGWEIRKPEWYNSYDGGFACDDCLMDQAVEREKESAI
Ga0335036_0011817_4540_4680F006842AGAAGGMKATPAICGDHLVPISECDCLSYMREVASAAERLIQLAQEREELSK
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