NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0016930

Scaffold Ga0335036_0016930


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0016930 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5910
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F081045Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0016930_1413_2654F081045GAGGMTWLPEWRVTVGDDVYTTVTSVSFASGRLDIDRQPTAGYCRVEIINANNAPFTINVTEPVTLELKNSTGTYVTVFGGEVSDFNIGVRSPEESGYITTGTILGIGSLAKLTKAVYNTALAEGLDGAQIAAILGAALNLSWAEVTPTVTWDTYPATTTWDDAESYIGTIDSGFYTMIALAANASAKSQTLADQIATSALGQIYEEKDGDVSYDDADHRSNYLAANGFTNIDGAYATPTSITSTTQTARMRNSLIYRYATGYGSTYTTSDADSIATYGLFERSQDSNIKNLTDITDIASRELKLRANPRGSLGAITFRLDNPDMPSAMLDSLIGVFFGQPMQITNLPSNLLDGQFDGFVENVALRATPSFTEMTLYISATDFSLSTTQWETVLPASLIWTGVNGTLTWTNATGALT

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