NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0018089

Scaffold Ga0335036_0018089


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0018089 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5696
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (81.25%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024097Metagenome / Metatranscriptome207N
F058137Metagenome135Y
F096878Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0018089_3852_3998F058137GAGMCGVVMVGKKIRSVRVSDQVWAKAKAKAQSEDKSVSEVIVDFLKGYIK
Ga0335036_0018089_4897_5256F096878GAGVGLLINRDPLFSVHNALNGDVVIYLEERDANCDLIEDVVTQVPMGSIQAINALSGLDLKSIESARLMDKARSAVPDLAIKLASMSESEALTLAEKLITAVKYARAMRSQPLATKLELVK
Ga0335036_0018089_5258_5608F024097GGAGLANPNGRKGALFETSVMKWLREHGVSAERLSKAGSADEGDVVCVVANKTYIFELKNRKAITLPAFWDEAITEAKNYAKARGLEQTPPAYVIIKRRNAGIEKSWVVQDLEQWLGTRE
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