NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0043052

Scaffold Ga0335036_0043052


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0043052 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3486
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031492Metagenome182Y
F032578Metagenome179N
F047047Metagenome150N
F057369Metagenome136N

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0043052_1361_1537F031492GGAGMSQFNVGDKVILDDESGVIESVLVGVEGSTYDVRYGHTFMIAVDVPEEDIQPWMADEQ
Ga0335036_0043052_1858_2100F057369N/AVVIEVLKMMIEDPIAEFIEAAADGLCTAYVVVATVERIDGSQSFWITTLNRQTSSTTLGLLVSATSAEQYRIAKSLTQGM
Ga0335036_0043052_1_369F032578N/AYIKTQIQSLDHERRNEYATLLIDAQSAKRNINLSANKSHRRYEIARGILLLMQDGQFDRDLVKGICSHITKETYTKAGEALGHLNAKQAEQFAQICYGITVDQVTIQYIPEQNSFRVQEVRQ
Ga0335036_0043052_2123_2362F047047AGGAGGMATQPKQHRYPAINLLNTFTPGTNDQQIGDMLGISRSCVVRWRTVGKTLYEYQADNYAIKLGFHPAEIWHNWLDDALTV
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