NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0061988

Scaffold Ga0335036_0061988


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0061988 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2827
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010672Metagenome300Y
F021488Metagenome218Y

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0061988_1008_1211F021488N/AMEKTMSDGLFNKDDFESIFGTPKVHMNIDPMARNAVLEEVALEFDAMRIAFGDTAHSFATYVREMKT
Ga0335036_0061988_1469_2101F010672GGAGGMPDIQTAFKQALSKTLADWDDEGESPPVQPVSASFSQPAQPTKELPVKKTFNVSNNISRVSFDYIKNNPGSTRKEIIEALDHQGFNAGSTSSLIAQMRRNNLIHEKDNLYYADVDEYRPLKSLKALKKMEQVPAPPKRKYEKKAVTGIGALLKERLDSTPMPIVSEHTAPKQRGFMTTLVRTKSPEDILKDMTVYQARELYVHLKQIFGG
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