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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034106 Open in IMG/M |
| Scaffold ID | Ga0335036_0137519 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1752 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (88.89%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (100.00%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003212 | Metagenome / Metatranscriptome | 500 | Y |
| F015702 | Metagenome | 252 | Y |
| F020863 | Metagenome | 221 | Y |
| F023834 | Metagenome | 208 | Y |
| F026864 | Metagenome | 196 | Y |
| F068766 | Metagenome | 124 | N |
| F073256 | Metagenome | 120 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335036_0137519_1105_1281 | F023834 | AGGAGG | MSEPTVDYWKAKADLCRDLALIQIEDEETEKEAGMNLMRMVHALSMVDTFNEGGSDDD |
| Ga0335036_0137519_1271_1441 | F015702 | AGGAGG | MTIKEVELEYTVYNLVQLARKVWGDNADEYLAGRLESVITYNQMKVLIDSLKEESK |
| Ga0335036_0137519_133_462 | F020863 | GGAGG | MQTTMEEVRSLVKVLEELIQPLFEGEVVEDAPYESMKRPHLVLQEGSKTYGRAWRIHFTGGSKYGSGHWEPRGFSDYLGGTKAEAAQSLRKLIAGIRTGLLIAEKEGKA |
| Ga0335036_0137519_1438_1692 | F068766 | AGGAGG | VSEDNVVGFHPKNKLVNFYEIATEEGNAVWGGEDPHSAVQWLRQAPLNSRLLVSCWEAGEEDARLIIEPIDITKIVFAVMAGVQ |
| Ga0335036_0137519_459_626 | F073256 | AGGAGG | MKLQEVDTIQDLREWVEENMPGARLTVDSAGDIVIHTGLHSTMGGYLHKGGEEDE |
| Ga0335036_0137519_722_967 | F026864 | AGGAG | MTEEENKVAQFVFTVVIAPANKQYDVELWDFAGDEPKQLSTGTGSNWRTALGEALSKIELPVDKQEKTINDLVKESAEDEG |
| Ga0335036_0137519_957_1112 | F003212 | AGGAG | MKDRWLVTIEIETYDGDPKAWDWDILLGNEDTSKVISSEFKGRVLKEDSNV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |