NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335036_0174829

Scaffold Ga0335036_0174829


Overview

Basic Information
Taxon OID3300034106 Open in IMG/M
Scaffold IDGa0335036_0174829 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME23Aug2013-rr0131
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1510
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016243Metagenome / Metatranscriptome248N
F022147Metagenome / Metatranscriptome215N
F022593Metagenome / Metatranscriptome213N

Sequences

Protein IDFamilyRBSSequence
Ga0335036_0174829_151_396F022593N/AMNKQEELKFFRDKVEQIRRYKLANYLAKRDIADILLMEDLEAESRRSLAHNHELLERIDLLLGILEGIGELIIEFKEQEVS
Ga0335036_0174829_423_932F016243N/AMNEAQITKIVMRLATRSKWSIEARRDKVSQMIAEEIQRSDELNQALMELDILLDKLQKVYQEVDDVCEHLLKYYLKSEYIQMHRPSFPNTNTIKDSKAEFTLRLLEVFDSRNSLKAQNSEITTHSIYHKIDHGLRIALNNNIVTLLTIDNELIDLKVMYEFLIENCKNE
Ga0335036_0174829_938_1483F022147GAGMQHEKDEYIFQLVTRAVKEIDSSEICRKREIFKILAKSEVSLEMKQILAKSARVISELQHYTEEAYNVSQYILVHYFKIDDLIKKESYPLQEVITFHNKKCRIQKSKDIATLEKVAIANKLLIKTLSEEIRNALKEQLALVSKVGSTFTNLSLMYTYIENNDSSLQSEAKSRQWSNEYQE
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