NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335037_0002194

Scaffold Ga0335037_0002194


Overview

Basic Information
Taxon OID3300034107 Open in IMG/M
Scaffold IDGa0335037_0002194 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Apr2017-rr0133
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10426
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (69.23%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066572Metagenome126N
F083629Metagenome112N
F086810Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0335037_0002194_5918_6463F083629N/AMRHTNLPNHFYVQVDNQYLGPNMPSGTTPGMWHAIYARPGQYLSCHVILASGAHWSGLPLHALSTTESFDPDFDDSSQPWGAMGNDIEAVQFKALEGLTVNAFRAETSGIHTGIVIDWADGYSQYPAEHKPLSLIIADEGYFLLLPNNHFTVKDKHFVDTKKYVDQMKFYKRGDLVYWET
Ga0335037_0002194_6558_6899F086810GGAMMYPTTRNKAKILRAAMYLRHEGFTVGQTKTGFVAVDDDGIVIQATPYRTSAQIFHPVLKIYREEYALSLQEIYWFTEKLSLLTEWAKDPNAKEPGRVLSMSRRPVPSRQRTA
Ga0335037_0002194_7697_8128F066572N/AMDNRVLMEQLWPKWKLEPVMSSLLNEKWGQLHQDKLQSCIRQHRLARDFKPEISAIHKAYCALIPQNLVGEREVEQTRNDLERCTPISAKEFAEWDVWAEAMLKNVTNEELKQVHDFIGHVPESRRILAVAVEHVRKPSVRYA
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