NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335051_0001246

Scaffold Ga0335051_0001246


Overview

Basic Information
Taxon OID3300034109 Open in IMG/M
Scaffold IDGa0335051_0001246 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME26Aug2009-rr0158
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13106
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006660Metagenome367Y
F024113Metagenome / Metatranscriptome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0335051_0001246_2216_2866F006660GGAGMSFQTIVDIQQSMTVNNRRTVGQQVTRGGQIRTAQYLTSVPWVFTIVPHNYLYYPQVRDVIQTIDNLDRQTAANITFSGTTLSWFTEYKGGLSAGQAAALTLASVPPANSQTISVGNLPAVGAGTVVFAAGDFLQLGSYVYKVTQQVLRGSGSTVNVNLHRPVIGTPSTGTLTAVGSAVYFPVYAEVCPTYSLTPMTNGAFVNWDQPFVFRENVAP
Ga0335051_0001246_7323_7742F024113N/ALVWNQRTYWNLSFTNCATGLPLSLVGATIDAQIVRRQVSNIVDTRNGLTFDIADYTPTPTPVSLTITNRVDAAGTCTLVIDDSTWSLINTDPQLEINAANCVGFSGRVKVSFPASGTTPQDDAIIFLLFLVRSDGVVVV
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