NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335051_0054988

Scaffold Ga0335051_0054988


Overview

Basic Information
Taxon OID3300034109 Open in IMG/M
Scaffold IDGa0335051_0054988 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME26Aug2009-rr0158
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2119
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013634Metagenome / Metatranscriptome269Y
F031456Metagenome / Metatranscriptome182Y

Sequences

Protein IDFamilyRBSSequence
Ga0335051_0054988_308_709F013634AGTAGMSSCNKSKDIMAIQIAPLVGAGLGALQQSKIEKALSGEKTYTKPKTIFGKLIGGVSGRTAAAEAQAMNKSEPVTGKVMNALSSSPATPRPATPVTGGISFGTQAARMGYLPLAIIAGVVAIFYFMRRGGRRRR
Ga0335051_0054988_696_1361F031456N/AMSLIGAFPASASAVFNLDFLPEKLLIGAAGNLNQRLSNFSVVTSGVQLMSITDVTRLTALAKFDSGAILADNPGNSMTASYLKLATGRINKATTITGTNGTATVTDVYAASTNISNVGRRAVEQSINPSANATFDNFEALIFDPANILRAQITFANGFTDEYSVPELLALYSNYHVSDVSGSLEGLACIDSDSGAGLISQVVLYNGAGGTTVVLKSDYVQL
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