NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0335055_0001590

Scaffold Ga0335055_0001590


Overview

Basic Information
Taxon OID3300034110 Open in IMG/M
Scaffold IDGa0335055_0001590 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Jun2009D10-rr0171
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12351
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (9.09%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037723Metagenome167Y
F084245Metagenome / Metatranscriptome112N
F101157Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0335055_0001590_3645_3860F084245N/AMNFELITAKYDCRCSLTGKKFSRGDQVYYNYEAKTFLDPVYHENIMSQQKSRGAQSYFERHKKLNKIYPNT
Ga0335055_0001590_3912_4157F101157N/AMGVGIFLTPKNLKHMAKFEFVTETNVVTQSVIYYTRKDELFMENSLSHSKEKAYDRFINISSGVKTEPIVQVIETRYLITK
Ga0335055_0001590_9419_9778F037723AGAAGMKPITKTNNMKQVYVENNMGEGMEYDYDLKYEDGKTVCLYSHNSEWTEHLQGQKAGSIKDVGHGVVIKIGEQKMTLDYAEMQVLKILLLSDLEGTDYFEIRESITIKAWPRDIETGENL
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.