Scaffold Ga0335063_0027128

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0335063_0027128

Scaffold Ga0335063_0027128

Overview

Basic Information
Taxon OID	3300034111 Open in IMG/M
Scaffold ID	Ga0335063_0027128 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Oct2011-rr0186
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3672
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (77.78%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007029	Metagenome / Metatranscriptome	359	Y
F049626	Metagenome	146	Y
F066777	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335063_0027128_1074_1679	F007029	GAG	MGFLDNYEDVNARIKRFRSEFPTGRLIAYIEDIDVIKGTVLVKAEAYREYEDALPSAVDYAFGNVAHLTNNMKKWLIEDTVTSAYGRVIGLLTPSEHARPTVQDMQKVENLPADPDPWSNRAAIEDIPTMATAVADISTQLGGELVTEAPRCSHGTMIWKQSATGSPKSWAGYFCTERTKATQCTPRWYVLRSTGKYEPQV
Ga0335063_0027128_2053_2238	F066777	AGGCGG	MGELTFIKDGYATTIHDDGNITVIAAQYCDQCRKWQTALNGFNVRDVSGEVVMWLCADCR
Ga0335063_0027128_2238_2399	F049626	AGG	MTTYKYDCRKCKKVTEQIERIITDNLPPNVKTLQCTKCGVMGVCLMESADADL

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.