NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335063_0039995

Scaffold Ga0335063_0039995


Overview

Basic Information
Taxon OID3300034111 Open in IMG/M
Scaffold IDGa0335063_0039995 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Oct2011-rr0186
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2989
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007690Metagenome346Y
F024555Metagenome / Metatranscriptome205Y
F037728Metagenome167Y
F038234Metagenome166Y
F062757Metagenome130N

Sequences

Protein IDFamilyRBSSequence
Ga0335063_0039995_1075_1410F062757N/AMLHIKNIRKLGGRRLFGGWIITAVGGNPNEPHYLLDIHCNGPIGNRIDGCTISLNRRGEVQRTMGRPVELAYFLYYNGERTDVCVTKDWILNPENFISQLKYIIKEYHNKR
Ga0335063_0039995_1812_2150F007690N/AVDDIDKLNYMLTIKNILKLQGQGIWDGWEVKLIYEGNHNDTYIFELHRQSAWGNKECTIMLERTGHTHSDKLVYFFIYNSQRTDVCATADWLADKDNMIAKLEYILVNKHNL
Ga0335063_0039995_201_527F037728N/AMDEIESDFFGVRYCSDADDKYIIGLDTNDVISFKQLKPKHYKMSIDKVCREDNRYHIWLWDMESNISYPMSIDRDELSNSSAFTKFLNHTLKLADGGEFSGSNGCMIK
Ga0335063_0039995_2492_2800F024555N/AMLTIKNIEKLYKLNVGNWRIGKVVTLDSSYLIQLYKYNSMETKQVNIERTPIGEGDTALYELWFWEDDSGGAKPIRRLLRKCDFELGPLYVIKNIENMMNLK
Ga0335063_0039995_795_1070F038234N/AMLVIKNIESLKGTYVGHWKIHYVAKLQNSYLIKVVHNGSPFDMFNLMIGRVKTSNGDYLMYCQETSNSHYLPIESIKDSYTFIRFLIDELI
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