NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335063_0396069

Scaffold Ga0335063_0396069


Overview

Basic Information
Taxon OID3300034111 Open in IMG/M
Scaffold IDGa0335063_0396069 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Oct2011-rr0186
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)700
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005480Metagenome / Metatranscriptome399Y
F069843Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0335063_0396069_2_514F069843N/AIGKIRNSLVFNYGNNYASQATDLDADSIANYGRYQRSVTTNLHNLADVNILMERELGLRAIPREQLQSITFRLDNSELPDAERDKLINAFFGEPIVINDLPINMFNGSFNGFVEGYAIKATPGYVDLTLTLSPTDFSLVAPQWATVTPPSLIWTGVNATLIWQNAFGGLT
Ga0335063_0396069_514_699F005480GGAGGMATTTPNFGWPVPTSTDLVKDGATAIEALGDSIDASLLDLKGGTTGQVLAKNSSTDMDFIWT
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