NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335066_0058081

Scaffold Ga0335066_0058081


Overview

Basic Information
Taxon OID3300034112 Open in IMG/M
Scaffold IDGa0335066_0058081 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Aug2014-rr0191
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2555
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002421Metagenome / Metatranscriptome560N
F002794Metagenome / Metatranscriptome529Y
F033005Metagenome178Y

Sequences

Protein IDFamilyRBSSequence
Ga0335066_0058081_1784_2182F002421AGGAGMKTCTICKETIAYPEITGKTHFVCDGRVPARKHAPFIEGMLASQSSADARWTKPEQNQVDAAILHVARTKGFFTSDDIWKHLGDQFPVTKGIAGRLNAAARRGIIRNTGELAYANRGGAHDHAQRLSVWAGI
Ga0335066_0058081_2202_2480F002794N/AMECNKMSEGVAWNQGELSEETRRMVMEQMMTTKHDMAIFNLINEIADISTNPHASIIQRLKGMKNSMSLEEPMPLHDVTTLDLAIKALQAHS
Ga0335066_0058081_3_284F033005AGGMTRERSEYDTNVYKQARAELLRDSPICHWCKKNPAVELDHLVETDRGGSIDDGYVAACKSCNGSRGATHRNRKLANAKQNREKAINDFLYTSQT
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