NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0364945_0148034

Scaffold Ga0364945_0148034


Overview

Basic Information
Taxon OID3300034115 Open in IMG/M
Scaffold IDGa0364945_0148034 Open in IMG/M
Source Dataset NameSediment microbial communities from East River floodplain, Colorado, United States - 29_s17
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)704
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment → Sediment Microbial Communities From Colorado River Basin Floodplains, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9229Long. (o)-106.9499Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003707Metagenome / Metatranscriptome473Y

Sequences

Protein IDFamilyRBSSequence
Ga0364945_0148034_185_703F003707GAGGMLAWLRRLIVSVGIGGASYAFMLGIMVLSVVYDQEFEPIITFAFDAGRSITNWLDSLVSGTYWGQIAVNHLRERVNMTHVVLSIPAIVVATILVGIPLNWLLGGTRSGLQRIAIALLSVPATVVLAVALFTFNALVPETYAALLRFADWIWQVSLTALSSRGESIPGAVKLAN
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