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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034116 Open in IMG/M |
| Scaffold ID | Ga0335068_0000038 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 118316 |
| Total Scaffold Genes | 193 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 82 (42.49%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (40.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F006610 | Metagenome / Metatranscriptome | 369 | Y |
| F008051 | Metagenome | 340 | Y |
| F013139 | Metagenome / Metatranscriptome | 274 | Y |
| F014118 | Metagenome / Metatranscriptome | 265 | Y |
| F014119 | Metagenome / Metatranscriptome | 265 | Y |
| F021016 | Metagenome / Metatranscriptome | 221 | Y |
| F025738 | Metagenome / Metatranscriptome | 200 | Y |
| F039511 | Metagenome / Metatranscriptome | 163 | Y |
| F090060 | Metagenome / Metatranscriptome | 108 | Y |
| F104786 | Metagenome / Metatranscriptome | 100 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335068_0000038_21583_21795 | F104786 | GAG | MLKDAIALLSQFGLVDGNTLPDSTPGTQYQFRSCSPNLIVPAPGMKTVISGLLKDHGYTVKAIGTMLKLV |
| Ga0335068_0000038_21876_22022 | F039511 | GAG | MKREMKPLEEKIKALRSIMEYWECFFQDDEVGQALAEVEAELDKFRFK |
| Ga0335068_0000038_23187_23378 | F014118 | GAG | MAIGKKNSGKFQQDAVIGQFARDARRAREISPIVKAALAAGERNRIYRAEQEAKAKLNPRFVR |
| Ga0335068_0000038_2873_3040 | F025738 | N/A | MAKKARLAPNQRGFKKLQCKYCDNICERVDNNATSVTCWQCTQRLVNGEKLEIKK |
| Ga0335068_0000038_3055_3234 | F006610 | AGGA | MAHYKFKAKITDDIEDAREIVRVTGKMLEEGKIDKESALDNLSRALKKLDSARYYIDRE |
| Ga0335068_0000038_34140_34457 | F014119 | N/A | MKITKEMVMKNAKNVLTVTAFAAVATAAFQLGAKYQSGKKEQVAVENPYAHAFSPEEISIAVNESSELIMIERKTGKYIVYSDAIGQTIFGMYANRLHQEANGIK |
| Ga0335068_0000038_47403_47897 | F013139 | N/A | MMPVFVSNHITDEMIELFLQSGEAMTINAGKLSEQVVLPYLENYFNCPGQVVDADGYDHLFGTHRNEHKKLAVRKTSASAKNIGENKRGKCDSISFHHPGANAIFVINSETFYEHVILNYDKTGNCWDVNFYQDMALEGKGKRIGCNAWKNTEMLLKYANKIAL |
| Ga0335068_0000038_53509_53895 | F090060 | N/A | MGRKSAHTGMSPKDRSINLMDKFITKNANRLKDQPVLSGRRKDPNIPIHMWPLKDQIEYWDSRTEDDAFDDMYRSYSTWYSELKKISGVYPATFIDFTTKLKPLMVEMWEKKMMPKQAILELRKHGVY |
| Ga0335068_0000038_53899_54078 | F021016 | N/A | MFNWIHKLRIGLLHASYHRNLKKAEQARKQHDVLEFKKYVYKAEDAWRKLVILTEKSKK |
| Ga0335068_0000038_87858_88106 | F008051 | N/A | MIEILGWLSTALVLLGYITNARGLTKWAMITWILGDCGWIMYDVYIQNISHMALSLVIIVINLTGIYRLWKLSSKKKTLLKG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |