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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034116 Open in IMG/M |
| Scaffold ID | Ga0335068_0001263 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 18769 |
| Total Scaffold Genes | 37 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (32.43%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000957 | Metagenome / Metatranscriptome | 821 | Y |
| F001338 | Metagenome / Metatranscriptome | 719 | Y |
| F001780 | Metagenome / Metatranscriptome | 635 | Y |
| F003583 | Metagenome / Metatranscriptome | 478 | Y |
| F007416 | Metagenome / Metatranscriptome | 351 | Y |
| F024551 | Metagenome | 205 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335068_0001263_10579_11022 | F001338 | N/A | MTTENNDRPPLTSISTNGTYRLKLIKPKFEKVKQWEDGTTSCRLFFVDDKGFCLSKNFSSKYGKALAMLVGKFSGKYTNEIRLDATPAEYMQYLEPACGQTILVGVEVEANGEWQGKPQYKYKMTYPRGSQKPTAPEEPLPPEGVPF |
| Ga0335068_0001263_15163_15738 | F001780 | AGG | LLIHLGNILAHIAIVTRARLNDLTAPAKEAKSFDAWFFAQPKKVQEKMRENGVLPYAEMAQPRHVFNIDANHPDWAFNPTDIGRREEVDAFISRDHVGVMLKGFMDALACTDNFAFRRHVELIRWALSLPGCLSSRLIGKMYGRSHFWMRARAKEIQRTVNSDACGLFPHVNARRGKNKVISPLPPTPPKR |
| Ga0335068_0001263_18430_18684 | F007416 | N/A | MASGLFIGLTECELLDIKAKAVAMITEGKTLMSYSDSGSSASKQFAMPPKEMLAEAMFALSRLDPATYGFRRTVISTDWQNRQD |
| Ga0335068_0001263_4917_5240 | F003583 | N/A | MAKAKQSPSGSGNLLLAVTLLTGFAGVSALSSAYIAGYVLDQLQSTDALVMIVTDAGLKSDSADLERNMSTATLALKSVRDLGWALAVGCLGVGVAVFLRSRRQNAS |
| Ga0335068_0001263_6088_6423 | F024551 | N/A | MTIIRPDSLPRLWWLFPWSIARQLHKNAVAIRKMADNQSTTITNQANILGRYMDENRELKAEVTRLSHSREHWIAKHDRAYEVAMHNERVIADMESRIIRGAITPDAHPHE |
| Ga0335068_0001263_6416_6700 | F000957 | N/A | MSSFRHLDGMVGLLSEIFEINERILTGDICSNKSAIASTRMKKLLHHYHEALHEDGAVKVSLQAYVAAGGWVGITYSYELDGFEVAGSQVPRRV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |