NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335068_0055128

Scaffold Ga0335068_0055128


Overview

Basic Information
Taxon OID3300034116 Open in IMG/M
Scaffold IDGa0335068_0055128 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2316
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031482Metagenome / Metatranscriptome182Y
F051912Metagenome / Metatranscriptome143N
F079619Metagenome115N

Sequences

Protein IDFamilyRBSSequence
Ga0335068_0055128_1095_1337F031482N/AMRNRYEKSPLSLIDGGSRIKITFKNGIEREYDNIKDVSAYVAKVLSESDYMINKIEMEKEVVTKEWSPLFGRRRFTQDLI
Ga0335068_0055128_1406_1771F079619N/AMEEINIQEWDNLQPDPISDKTKVELALIDLYNRLAMQVPANHQEILDELAEKLLSQEASLTVKQVAGSLDASVSETKLRVEANSPYNDGWTKQFYEKELQKVTEKRDQDYMYNWIRSKSG
Ga0335068_0055128_875_1090F051912N/AMTEKEKAESLVDEFYQYTNTNSRENAKACAKILAKEVILKLKYNKVMKVVVDYWEDVLLEIDRIPAFKDEL
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