NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335068_0168562

Scaffold Ga0335068_0168562


Overview

Basic Information
Taxon OID3300034116 Open in IMG/M
Scaffold IDGa0335068_0168562 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1171
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Epsilonproteobacteria → Campylobacterales → Campylobacteraceae → Campylobacter → Campylobacter coli(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005528Metagenome397Y
F021759Metagenome217N

Sequences

Protein IDFamilyRBSSequence
Ga0335068_0168562_1_543F005528AGGAMRILSAIMATVATLTMSLGIAHAAYAPDVTTSDVEALQPLWQPDRLDLPKPIRFRHGDVSWLPSLAKQAGWPDHAIPKLSELILRESGGCPNRRGGDKVDKDCNITGVSEWNHRSDTGLLQINGVNYDTKRNKWAAICRELNICTQAPLLDAYTNLQAGLVLYRLSGFEPWNPCNWTVCK
Ga0335068_0168562_929_1171F021759N/AFAAVVAALGGIAVAIIQMRNLAEENRTDHAIVQKRLDTVIDMVGKTSAKLTSHLDWHVNTSTKEPRKDLKVKQVATRKKK
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