NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335068_0174184

Scaffold Ga0335068_0174184


Overview

Basic Information
Taxon OID3300034116 Open in IMG/M
Scaffold IDGa0335068_0174184 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOR
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1146
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039484Metagenome163N
F041197Metagenome160Y
F091368Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0335068_0174184_167_502F039484N/AMILKNPDKILKQWIPATNGDIWFVDDVTVTMNEQGVSYIFRFITELPVKNSPNQQYYHSSRRIHKEVTLRFNDRNTYSLLTDEKIWHGFCGDIDTMNKFITVVADVLPNTY
Ga0335068_0174184_499_795F041197N/AMSITLDSGHLTMKGSSKAIIKSSIKIVGTNSVLPIEIVGDFKDIPQNLHQLYMQSMLASYGSVNVYNNTEPEPKTIKEQKSEWRLNRIVDIISKAISK
Ga0335068_0174184_807_1145F091368N/ADLAREQAKIALDELLKLEQEKRKQTILTIENIDKIKGHDYSAWLKVGGVKESDNHYEFTLLDEKHNQVETILLHRKQTSDKRYIMEYNNQTLWVSKDRLSTIDGVIECMREI
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