NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335053_0007170

Scaffold Ga0335053_0007170


Overview

Basic Information
Taxon OID3300034118 Open in IMG/M
Scaffold IDGa0335053_0007170 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Aug2017-rr0165
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8009
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (68.75%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011213Metagenome / Metatranscriptome293Y
F062556Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0335053_0007170_3565_4809F062556GGAGMSQWTPEWAVSINGAGNVTNLTLANLTITSGRTDIYSQPYAGYCNVEIINLDQSPIAIDINDQVSIKVKDSTGTFVNIFGGFVSDIDVTVSDAGTNGISERIKVIALGALSKLPKSLTEGVLAKDFDGDQIYSILSDLLLNNWNEVPAAETWADYTPTVTWANAENVGLGEIDQPGNYELTARSSDLTNVYSLVSALATSGFGYIYEDAVGRIGYADSTHRADYLGTNGYTELSANTALARGIRTQKRSGDVRNDVTILYKANAEANAFDVQSQAIYGPQQYQITTSLEHNYDAEEQADFYLGLRAFPQPQFKEITFPLSNGELDDTDRDALLNVFMGLPLDIVDLPSNITNGQFQGFVEGWTFQAGYNQLNLTLTLSPTAYSIITTRWDRVNAAETWNTLSPTLQWINATIVA
Ga0335053_0007170_7851_8009F011213N/AVVSVEVFQSRTAPGGQIEGVDFTPSPYRMGRSLFNRVVGLLGPYIDVETMAQ
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