NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335053_0171472

Scaffold Ga0335053_0171472


Overview

Basic Information
Taxon OID3300034118 Open in IMG/M
Scaffold IDGa0335053_0171472 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Aug2017-rr0165
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1448
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002869Metagenome / Metatranscriptome524Y
F083707Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0335053_0171472_193_462F083707N/AMNQEIELTPQGGRYYRAMAFHWLIVAVFIVPVAAALIAAVVNPFWFRNSMFEWVERGVNRLSRWRNYQKYRIYLGCDPRMWHTLRGDLQ
Ga0335053_0171472_987_1370F002869GGAGVNTGEITDEMLDRKTAWCEQNLFWASAAKVQKMTDFYFEKTRDSVDQDWPESFDGVYLAQVLNVERVSYRIYYSRDNLTLRLFVFLPHCTYSEKQKMLDMGFVIAKPGDTDNIPDKPVEQIVEEIEQ
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