Scaffold Ga0335053_0585853

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0335053_0585853

Scaffold Ga0335053_0585853

Overview

Basic Information
Taxon OID	3300034118 Open in IMG/M
Scaffold ID	Ga0335053_0585853 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME05Aug2017-rr0165
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	644
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F029049	Metagenome / Metatranscriptome	189	Y
F030767	Metagenome / Metatranscriptome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0335053_0585853_170_598	F029049	GAG	VRNANTSDASNFGQVYKNWHELVWQEAEGASAETAVANYFGDYAFVPKIHNAHEEADVGENIEVKWTKHANGHLILQNRGPGRPNDVAVLVTGWSPVYILLGWMPVHMAKVPKYKHPYQDNYWVPRSNLFEMQYLKRSNYGV
Ga0335053_0585853_28_180	F030767	GAGG	MAYKTKCRLCGKITDHIERVITDNLPPYVKTLQCVKCGVMGVVMLEDLKT

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