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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034119 Open in IMG/M |
| Scaffold ID | Ga0335054_0015353 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Jul2015-rr0166 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4665 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (25.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → unclassified Terriglobales → Terriglobales bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F022872 | Metagenome | 212 | Y |
| F035741 | Metagenome / Metatranscriptome | 171 | N |
| F083794 | Metagenome | 112 | N |
| F100544 | Metagenome | 102 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335054_0015353_1057_1698 | F083794 | N/A | MTATQATKQLLDMGCVFLSIVDIEGNTIVPKQQNKFTTPADIKKQAEKINTYLKTAPNGTYVIEGRIGGTSKPTQIVIDKGEPTPAIAVSNSAPSRGISDPGAESVLSYRAALDMQNQIATLTAENNRLRDLVEALEGDLADIEEAQPEQMAESPAMGALGQLAAILPAVVDKWFENQKENREIEKAKLYQAAQARQAQAQYQSNGHSDYDSL |
| Ga0335054_0015353_1_168 | F100544 | N/A | ALHYASPATGGFSGGFPFFIPIPRRLTGQDTIQIRFTNAAASQNVDVTVWYRNEL |
| Ga0335054_0015353_239_1057 | F022872 | N/A | MSWQIPQQIEQDIIAGKAQYRTFQTGVGGQSILPVPTNAYAVIFGYDFSPAGGGLIQNNFIGSATTQELNPSSIRFFETQQISFYTGADFYPFLHHINVNTSTAVRQYTNPLPPTAQDATFFQLFHEIDNTPIARQVYITSDKDITISVGLVLDSDVATTGAIPITNRTPALLTYGGSPQTPAVQTDFGPAATPIQFMQPSPKDFQDFAFGLLPNGANGQAFATPDATRGLLDPSVYLTTLGGADFRDAAAANYFLCLHYALYTRTIPEQRG |
| Ga0335054_0015353_2650_2994 | F035741 | N/A | MTANDVIGKYLIAEQNVPLFAFPGGSQIGVVSNGLVVGPVYSWIEKNNKLYWQFDYTIPGNAPGSYYAEHRPEFWKLSTTGSGGGAINLPGTTSLIPKWALPVAVGALALFLFK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |