NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335054_0046643

Scaffold Ga0335054_0046643


Overview

Basic Information
Taxon OID3300034119 Open in IMG/M
Scaffold IDGa0335054_0046643 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Jul2015-rr0166
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2675
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002287Metagenome / Metatranscriptome574Y
F004838Metagenome / Metatranscriptome421Y

Sequences

Protein IDFamilyRBSSequence
Ga0335054_0046643_1130_1735F004838N/AMALSAQDKILYVANKLGLSTLNQMQGSTGAVYDVDREISGQIFSSASRHQNPGITNVTQNEFEVNEALLVETIAFYVNDSSNDLNFQALYGSNAVIVFDLIIGNKRVMKDTPVFAAGAPYTFANTAQFRVTAGEDTPTVFLPRHQVFMEGAGVLIPPQVQWYVDYRIFNVVTGATITPTDGTTIGCYLFGTRVLLNFNTSI
Ga0335054_0046643_540_1130F002287N/AMSQISKLGYVDSKLGAPSSGQQTTRILFNTIEAPGTTSSLSFFKNFQGLTQGQTNLTQNKLDSMESMVIKTIMLSQFDTSGTLQLFGGLPQQTLSIIVGNQTVVKNLPIHFNQGVNGQAFDRLHENGGSITDSLNVGTATAQVRQPIEIRLLTDIVIPPQVAFEVRIEANNAAYGTGAVVCALAGYGKIFSAGNTF
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