NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335054_0333246

Scaffold Ga0335054_0333246


Overview

Basic Information
Taxon OID3300034119 Open in IMG/M
Scaffold IDGa0335054_0333246 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Jul2015-rr0166
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)882
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005697Metagenome / Metatranscriptome392Y
F025683Metagenome / Metatranscriptome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0335054_0333246_130_303F025683GGAGMVLDLLDPETLGRLVLVIILMVISAAAGYAKGFKEGKREGMARRKAMIRHMANKAVK
Ga0335054_0333246_303_881F005697AGGCGGMGFLDNYEASRERLERWLATYPNGRIETRIVEFSAEKGYVLVEARAYRENDMIPAGIDYAYGYQGAYQQNMKRWFVEDTVTSAIMRVQQLVMGGAERSTKEIMEQVETTPAKIANTDTTYDYWTTKHGDVPSYKTAAEAEQSGIPSLGSSMDEVAKQLGGQLVAEAPQCSHGHMIWKQSHEGAPKSWGGYFCT
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