NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335054_0587668

Scaffold Ga0335054_0587668


Overview

Basic Information
Taxon OID3300034119 Open in IMG/M
Scaffold IDGa0335054_0587668 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME21Jul2015-rr0166
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)611
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014236Metagenome / Metatranscriptome264Y
F033720Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0335054_0587668_179_610F033720N/ATLNAFIAGLTGDEGLSASLTETQRGAESFGKAIGVVSGIISGFITFLREAIGLVVSLANELIRVVNIIPGVNVGSIPNPAPSTARSSLPSVPRASGGYTTGQGVTNITVNAIDGEGAARAVAKVVNDSAARSNPYLSRAAVKP
Ga0335054_0587668_3_176F014236N/AMSVWTPDWKLIVGGVDYTDITISDIQHQSGRDDIYSQPNPSYIQISLVALNGQTLPFD
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