NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335056_0000167

Scaffold Ga0335056_0000167


Overview

Basic Information
Taxon OID3300034120 Open in IMG/M
Scaffold IDGa0335056_0000167 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2014-rr0172
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)43556
Total Scaffold Genes65 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)46 (70.77%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F070923Metagenome122Y
F090310Metagenome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0335056_0000167_13187_13648F090310N/AMSSTLRALADSLATGLQSVTWGITSTVVERKNWANVDVDAMASPRVFVVPGNADVTRISRQVMQVDYTVSVFVGRHVSTDAEVDGMLDLADSVMLQVRAHSFGAGVTWPAGVTSPQTVSIDLNPDDALTERNVWRAVITATYRVFETNVLPTV
Ga0335056_0000167_27559_28023F070923GGAVPGVVQVQSLPRRVAHACCTYYACGQEVTVSDAPAGMLAHLRGRLREEVGPRAVKAGRAFDEFVDAVCRCWNCEHWTKLARAQPESEMAAVRDAKVLIAKVREDVEAMWGDSPELQKLYSDVGTDAVESFARLWFESMANRTWMRQACREARKT
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