NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335056_0042007

Scaffold Ga0335056_0042007


Overview

Basic Information
Taxon OID3300034120 Open in IMG/M
Scaffold IDGa0335056_0042007 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2014-rr0172
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3038
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010822Metagenome / Metatranscriptome298N
F012656Metagenome / Metatranscriptome278N
F035673Metagenome / Metatranscriptome171Y

Sequences

Protein IDFamilyRBSSequence
Ga0335056_0042007_16_456F035673N/AMVLRSAIRQAEAVFVHDLLRVLAWLCPDPTDLPMVLGPYPRPRIFCHRNNYPGMDLQMTNDQFIVAQKHRKYWDQYVASLTMRLPPDAVGELQAILTAHGRPPTNWWCADCVKSALQYIYLQADLFLEVNQNTINHSLNAPANPEQ
Ga0335056_0042007_2784_3038F010822GGAMKVVHYYHIYCGGNWQLILNQHMMAVCNYGLINVLDEIRVGIVGPPEQRKAVKEVLEGSMVADKVKVVVTRTNAWEQATLTEMYR
Ga0335056_0042007_924_1064F012656AGGMDSLMTVITTLCDCIGAVDESNAPNQYEVKMKIVNKISDLIDKIEY
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