NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335056_0183072

Scaffold Ga0335056_0183072


Overview

Basic Information
Taxon OID3300034120 Open in IMG/M
Scaffold IDGa0335056_0183072 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME07Aug2014-rr0172
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1221
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034828Metagenome / Metatranscriptome173Y
F079803Metagenome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0335056_0183072_3_218F079803N/AVTHSQIYERLLAVEAKVDQLDKNTQTVVAAFNAAAGAFVVLEWLARAVKPVLIIGAFCGAVWLAIENKLHQ
Ga0335056_0183072_817_1221F034828N/AMVTKKTPVKTPAKVAPVKSRTPKPKTEQTINVSVAAPVAKTETKKDDSTLGKIIGLIEWVDNPFKLFTVILLAFLAFAGYFAWDSRQVILQAITNQDKMPQLVKQEELIVPARSLLKDVDGLVLLVHKANLSTNS
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