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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034121 Open in IMG/M |
| Scaffold ID | Ga0335058_0000266 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2015-rr0174 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 41467 |
| Total Scaffold Genes | 76 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 60 (78.95%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Wisconsin | |||||||
| Coordinates | Lat. (o) | 43.0995 | Long. (o) | -89.4045 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001059 | Metagenome / Metatranscriptome | 790 | Y |
| F001739 | Metagenome | 643 | Y |
| F001915 | Metagenome / Metatranscriptome | 617 | Y |
| F004695 | Metagenome | 427 | Y |
| F021243 | Metagenome | 219 | Y |
| F066598 | Metagenome / Metatranscriptome | 126 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0335058_0000266_13010_13180 | F066598 | N/A | MVLVFVLMLPLIGSIYYDTLAAQKESKAQVERMERLRKQLEEDRKLMNEERQRHEK |
| Ga0335058_0000266_1540_1857 | F001739 | AGGAG | MTIFTTTITSMYTVNTPDPQYVVNVLWEVTGVDGEYTAKIGGNTTFNSADQTGPVTPYDQLTQAIVIGWIPENAMTSAQACVQGQIDSMITPPVSPQNTPLPWLA |
| Ga0335058_0000266_18317_18568 | F021243 | GAG | MKMEPEDEAFEQLALKQGQWEHTSGWRKKQISHMDMHSHPAEFVHLHRNDTLEEVAREIEQFALPFGRDTVQSFAALVRGMKK |
| Ga0335058_0000266_27994_28455 | F001915 | N/A | MVEMSDSIYGAEIDGVLTRDRAVFRHRLTVATTEQIFNKGREFIAVCRDLEDKLLGFCWFDRGGYTTYSNEEISNAKFHHLDLQLPVRVRVRMINEMIDQHILWAHTWGVPVVCSTSIRGEHDGFMRIHQKRGFTVNGSYAWIRTEKGIACLK |
| Ga0335058_0000266_29600_30241 | F001059 | AGGA | MATYDIEALKADLPTAKELAQFVYDKTQIALDLVGKPKEDQYHAAKNALEGKKVPSEFLTDENPYVDRRELIPEDELRIMPARSEDLPSEDSQVHYFGATNMPHPDDPQSDKKVAIDFKKYENGVITFQIVAPVEKVAVGSRLNKYGQVQPEKYTWLDPRTPETVLRRADGTLTKEGRGLYTYCVGEKGSGIWPLIDKEVVAIAQKNIANPWA |
| Ga0335058_0000266_32011_34164 | F004695 | GAGG | MLDKQNIVVESLESPPGNKGIEYKVAHEAYLKMVDYLRLTQAKNTLNRMTDYHYLNIPVSNSTEPIRGIDYIAPVVTPGIDYSTAVITKGLMPDGEVNFEFQKFNEADVGSMQAADMVKYFINSKNDAYQIIRDWTQDALLHKNGIVMISPVREPITQYKEVEGTKDQLRSFEIMAADKGLTTKRQQMRRIDVNLEGVMQETMMPDETGASVDMEDSIKANTVYRAKYKMTGYSTNIRIKHVAQHYFVCNPTIPGIQNQDFCGFYQPMTIHEAKQQYPYIELESFAEHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASAGADRFSRVVMLTTCWMRRDVDGDGEEETVEICFSGSYILYIKEVDFIPLASMCPKPIVGNFFGYSQGERLVPLQEYKTAINRAEIAFALQASTPRIGVNPEFIDAEEIQRGVSAMFILDRKFDPGKHVFEFAPMQGNLAYIQDAMDRFDADKMAMLGMTNPNDTLNPEVMKDGNSGYKLQLAMGPNQLIQDEMIKNCAIGLKDAIYIVWKTMIQYSDDYNIQQLANACMEGQDFLDAKSMENYDFIDRRMINIDMALGFLSEENRLTRQQLIIQAQTAFAQALTQMSPEVPELFAKLRRPYEDTLYALGVKHCDAYLPTFDEAAKIVQAKAAQGLSPEQQETQSKVDLNKSKVEETTAKTALLYKQAEDIDMDNMYEGIAAKRGKLSAVQID |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |