NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335058_0000696

Scaffold Ga0335058_0000696


Overview

Basic Information
Taxon OID3300034121 Open in IMG/M
Scaffold IDGa0335058_0000696 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2015-rr0174
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25571
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (20.45%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F066778Metagenome / Metatranscriptome126Y
F070109Metagenome / Metatranscriptome123Y
F072341Metagenome / Metatranscriptome121N
F093876Metagenome / Metatranscriptome106N

Sequences

Protein IDFamilyRBSSequence
Ga0335058_0000696_10294_10947F066778AGTAGMKAGAHTFKITPMNYSREPNWQKLKPEIDWDEQEEKLADKLNKYINKNNTVMNQGIVKSQKFVREWNGPSGTIYYFDLIVENNGVNEVGQVGVKDMNSPKIAVGATIHYTSEERTGPTGRKSTNFKLQNPNPFNGGGTGIVQSAYTPRKESPDVQNSISKSVALNNAVLFCKEQKGSKPGDVLDTAEIFLAWLKGEAVEAVQIKAVTNESADDEMPF
Ga0335058_0000696_12351_12650F070109GAGVSLTTSEVRSLLKLKAERDYLKIQFATLSKSDSISAIVIKDQQKSIDAWALTNEKTSQHLVKSQQELYKEAARKESWRSAALIGIPISFVGGIIFNLLF
Ga0335058_0000696_6243_6593F093876N/AMNLFKRKKEPIDLNAKLLPELCSCTIIQWNYSEDIGLESTYAEDIPFMFDARKCVGIQAEVEFRKDGTYYVGERTLALMQGIDNAIVIDVPYNEFKKHFQELKSNIITNDYIISRG
Ga0335058_0000696_7882_8622F072341N/AMSKELVASVQQSFNRSLSAEERAIAECISSPKLHTLNEQEFRELIAQAAVINSIKALPSDIEVTLLQQVTQNTYRSTSIKDWQNAFLYNAIGKDFERVEAFNLFSISFMADVLKRYEEYKAKVWRELNKALVLPEAEIKHIEPTDPLNVLHADVDRWNDGKHTWVEISAPYNCQRLFKQGIYKKSQWQPEVWARFEDIAKQKVEGKFKASNKVILGESAQAEFDGLQKIELSRLIYIDIIKQINNG
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