NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335058_0008679

Scaffold Ga0335058_0008679


Overview

Basic Information
Taxon OID3300034121 Open in IMG/M
Scaffold IDGa0335058_0008679 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2015-rr0174
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6296
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (18.75%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014956Metagenome / Metatranscriptome258Y
F021732Metagenome / Metatranscriptome217Y
F031483Metagenome182N

Sequences

Protein IDFamilyRBSSequence
Ga0335058_0008679_1120_1380F014956GGAMINIQDFALNASLTICPNHIVEPLHLKKWWRERGVGELEKYFCAGKKVKYDDEIDWKAISNHKKQMWYDSQNFQIQAGNEYSKRQG
Ga0335058_0008679_1732_1995F021732N/AMNITKYTCKCTLDKKLGHFVHVTFSHGFGLYGQTSPHSPEDNMEIHGWTFEPEDIDLELYPKITRYNLMPLVAENEIDWVILNNQSL
Ga0335058_0008679_687_1145F031483AGCAGMNILKGKVKYTAGKVFEGQYGPSINAVITLDNGTEARVYGKADDEKLKALKKDDAVTVIHDGKSYKVAFDMVTANEIPEKVQTPTEGANVQQAANVPAKSNGKMTLDEITEKATLMTSVYADIFHQLQASGLEPAQAQPAAATIFIQIGKYF
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