NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335058_0286084

Scaffold Ga0335058_0286084


Overview

Basic Information
Taxon OID3300034121 Open in IMG/M
Scaffold IDGa0335058_0286084 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19May2015-rr0174
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)958
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → Acinetobacter baylyi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028110Metagenome192N
F088239Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0335058_0286084_3_587F088239N/AMASFDELVKQKIKLLETVPEEIATAAERTQRQAWRKLAPLLSEMDVDAQGNITQTEDNVRRIGLITEELNKVLAGGEYRAAVQSFLASIDEGVQLTDDIARKIDSTFEPDNVQRQLLAISKQNAINAFFGSGLRENVTQPFLEQLTANVAARAPLREAVKALQGVIEGTDANDGRLLANVRTTANTAQAIADRSY
Ga0335058_0286084_574_948F028110N/AVPPSITFSNVYNYIRAIHYTDEETSAVYDLIINADELLLMSNADILARLASGSVEKWQDVLHNSGPQLIMELIRDFIPTEGAQRFLDQSMSDQITQLRAKAAEKIAVTLDPIQQAQQTLLNGIV
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