NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335060_0225918

Scaffold Ga0335060_0225918


Overview

Basic Information
Taxon OID3300034122 Open in IMG/M
Scaffold IDGa0335060_0225918 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME03Aug2014-rr0181
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1053
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002794Metagenome / Metatranscriptome529Y
F105163Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0335060_0225918_468_731F002794GGAGMSEGVAWNQGELSEETRRMVMEQMMTTKHDIAIFNLINEIADISTNPHASIIQRLKGMKNSMSLEEPMPLHDVTTLDLAIKALQAHS
Ga0335060_0225918_751_1053F105163AGGAGMKTCTICKETIAYPEITGKTHFVCDGRVPARKHAPFIEGMLASQSSADARWTRPQQNEVDAAIVHVARTKGFFTSDDIWKHLGDQFPVTKGIAGRLNAAAR
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