NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370483_0000082

Scaffold Ga0370483_0000082


Overview

Basic Information
Taxon OID3300034124 Open in IMG/M
Scaffold IDGa0370483_0000082 Open in IMG/M
Source Dataset NamePeat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28639
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (69.70%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)64.9123Long. (o)-147.839Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020296Metagenome224Y
F038946Metagenome164Y
F084999Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0370483_0000082_13622_14215F020296GGAVRNRSIGILLAALLSAGCACFAQQAIDTVAPLRANRLNDQVYVGFDHTRTDYALATPNGDELAMTNGVDVEYDMRRKEHLAYIATVRYGKGTPFDQSLITGAAGVSYLLHYSRYEPYVHAMGGYTRLASQHAAGGMYLSNVNSGFMTLFGAGLDMKVRERWGVRAISLEDLYLPFGTARSTYWSVGSGVLYHFERAR
Ga0370483_0000082_19016_19252F084999GGALLAYDTPVEYSPGGVTKDGRILVLAAAIITGLRLARDPRAGCLSERVIDAVEDGLFLANQLYDKALLRYGQGNVDFRW
Ga0370483_0000082_22567_22842F038946GGAMGKNKSRKMFQPGPHSGCEALLYEFREPPLQSDDEDDLPPASGQPDPRTVLIAAETFDEALFYLRFHSHEFNIYKAKCLGIVLMVSGSPAD
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