NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0370483_0001415

Scaffold Ga0370483_0001415


Overview

Basic Information
Taxon OID3300034124 Open in IMG/M
Scaffold IDGa0370483_0001415 Open in IMG/M
Source Dataset NamePeat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6638
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)64.9123Long. (o)-147.839Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017346Metagenome / Metatranscriptome241Y
F019610Metagenome / Metatranscriptome228Y

Sequences

Protein IDFamilyRBSSequence
Ga0370483_0001415_3146_3727F017346N/AMGIFDSFRKEEVTGTKVLVGQLGTGQGTKFDEELKADLRVYKRFYPSASSATFTTIAELRGAAGHHYDVLHLFCEVGAGGVIVDASGDRSTGTELLKAAVDSGVKLLWIGNDNSQEAYDAGFKTKGLKVNVVLTLRRLGSNTSLFLDSLLSKMQAGDTLSKAWSVASQPEGKSVQPDVPHTISSLGRGGVVLR
Ga0370483_0001415_4349_4504F019610AGGAGMRAYLAKLPAKAQLLVALPLIAVAYPVVMILLPALVHALVPDVVRSVLRLI
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.