NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370483_0001550

Scaffold Ga0370483_0001550


Overview

Basic Information
Taxon OID3300034124 Open in IMG/M
Scaffold IDGa0370483_0001550 Open in IMG/M
Source Dataset NamePeat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6341
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (45.45%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)64.9123Long. (o)-147.839Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014407Metagenome / Metatranscriptome263Y
F075408Metagenome / Metatranscriptome119Y

Sequences

Protein IDFamilyRBSSequence
Ga0370483_0001550_1859_2545F075408GAGGMAGLDLPEWRKFVCGMMIVLIPSSLLAQVSDRALLRSNGGTWLNGSPAPDTSTIFRDSLIQTQKAHSARIDAEGSSVVVQPETVVQYEGDELMLDHGSLQLGTASQMKVRVDCLTVIPITEDRTQYDVTDVDGKVKVAALRHDVKIHYAGGNLRKSKQNGSSDVIVHEGEQATREEHCGAAIKPTAGLDAEGAILNSPWAWKIGLVAAGIVACIGLCHGDDPISPWKP
Ga0370483_0001550_2542_3066F014407GGAGGMGKGLLSLIVLSAMGAAFGQDTNFATGPQYLITHGPTMFAQPISTPSLSLAGPPLQVGATSATAELTAGAEDQTAPLTPSDALPPVNFFSFYYGTYFGMPASNVIDISFKGPSPVRSELPASILDVGVWQITTPQALRERGIGVTLPEAAAYGKAHPRHATHVYTNADIDRLKN
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