Basic Information | |
---|---|
Taxon OID | 3300034124 Open in IMG/M |
Scaffold ID | Ga0370483_0028251 Open in IMG/M |
Source Dataset Name | Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_06D_14 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1693 |
Total Scaffold Genes | 2 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Alaska | |||||||
Coordinates | Lat. (o) | 64.9123 | Long. (o) | -147.839 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001457 | Metagenome / Metatranscriptome | 691 | Y |
F003509 | Metagenome / Metatranscriptome | 482 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0370483_0028251_35_334 | F003509 | AGG | MANMTDNDPAGSTPPEEEPAPSRQQGPDTTQPAEDPGYLTVTGEAAGEDGSVALIIGGLPAVEGSAWDIGAPLDDRGGAPADEPGRAPDQASDEGTGRS |
Ga0370483_0028251_432_1490 | F001457 | GAG | MWTYTDGARTVKGCWRPGGIAGPGSWVLVDQVTGNVQGMVPAGEFSRRFRPVDVFADVPGLPTYLGTVTASDGTALVDLLLDRNPFMLANGPRRAARPHALMVPRSHRDGWSSATAQELAAGQTAMTLIAAWYRSLDGGHVVFCANDSATNLDYLRDVEAASGILVGRGSDTDVAVTRNPRQDVQHAHMHAFYAEHGDIENHESSALQGHPVVAQGHRAFRDALGSDAVRVERDAAGLAADVRGAAQPWGGNYCSYRLGVDGPWWVMPALGPSQDEVNRRLARADGLQAAPDPTLGEAINLVRPTLTDAGRRQAAQRATADQRASFESFTARHGLNARSLPVGLAPETPHAR |
⦗Top⦘ |