Scaffold Ga0370484_0015954

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0370484_0015954

Scaffold Ga0370484_0015954

Overview

Basic Information
Taxon OID	3300034125 Open in IMG/M
Scaffold ID	Ga0370484_0015954 Open in IMG/M
Source Dataset Name	Peat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1673
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location Name	USA: Alaska
Coordinates	Lat. (^o)	64.9095	Long. (^o)	-147.9448	Alt. (m)		Depth (m)	0
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F092428	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0370484_0015954_310_891	F092428	AGGAG	MRKATTIWTIVILGFMTCLGAAGYAQEAAQATYEKTKAEAKQNAESAAAAEREKPVHAYRLDFSVNELEDGKKINTRQYSLNLNADDANEIKIGTRVPVESGHEQFQYMDVGTSIWCRIGERPDGIPLSVRADISNFAIPDQGTGHESRPVVRQFKINASTLALPGKPMVVGSVDDPNSKRQFQLEVTVTKLR

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.