NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370484_0036615

Scaffold Ga0370484_0036615


Overview

Basic Information
Taxon OID3300034125 Open in IMG/M
Scaffold IDGa0370484_0036615 Open in IMG/M
Source Dataset NamePeat soil microbial communities from wetlands in Alaska, United States - Sheep_creek_tus_01_15
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1185
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)64.9095Long. (o)-147.9448Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006683Metagenome / Metatranscriptome367Y
F015081Metagenome257Y

Sequences

Protein IDFamilyRBSSequence
Ga0370484_0036615_1_303F015081N/AGEEEISVDVLIEEQRKLARSQNPFERVIGSLCIGAILKEQLVRLPNSTISQLMTDNIWCQLNLLAPESVIVEIASERLVEKREASLVCPECGSEFWRADE
Ga0370484_0036615_389_862F006683GGAGLADFDVLIDDPNLGRFALTAAFPNLELRDEDSDWRQVTLDELKKILADNGELAEVAEEPQASAERESFNPLVAEGEHIMNAEIALFRAGIPFLQLPFQQNKFASNLFMVLNVPKAKACLQRAGFQPKFDSVTVLFDGCNGQPIQLIQGSYRLPRAER
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